USAGE: pde2fasta.pl [-q2m] {file-or-pattern} VERSION 1.3 WHERE q2m - convert quersion marks to minus in the sequences before the analyzsis takes place file-or-pattern - either a filename or a pattern like /path/to/folder/*.ped, so you can specify directories with a lot of ped files. DESCRIPTION This program converts pde files and prints the output to the original files with an extension ".fa"