A 4-lineage statistical suite to evaluate the support of large-scale retrotransposon insertion data to reconstruct evolutionary trees
Churakov G, Kuritzin A, Chukharev K, Zhang F, Wünnemann F, Ulyantsev V, and Schmitz J
Systematic Biology, https://doi.org/10.1093/sysbio/syac082
Instructions
Names of Species/branches
A:
B:
C:
D:
Settings:
Algorithms:
Reverse (stringent)
Stepwised (relaxed)
Significance level:
0.05 (default)
0.01
Criterion:
Chi-square (fast and robust)
Empirical distribution (exact and slow)
Empirical sample size:
Marker Input
File Upload
A B C D
y(11) - + + +
y(12) - - + +
y(13) - + - +
y(14) - + + -
y(22) + - + +
y(23) + - - +
y(24) + - + -
y(33) + + - +
y(34) + + - -
y(44) + + + -
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Choose .csv, .tsv or .xls/.xlsx File
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Use species names from input file?
Example data:
You can download an example .tsv file here that illustrates the structure required for an input file!
Download example
Most Probable Tree Topology
Reset
Start hammlet calculations!
Download LL table (tsv format)
KKSC test results
Adapted tree parameters