Retrogenomics at Universität Münster
About
Tools
Intern
Overview
Usage
Tutorial
Run the pipeline
Species overview
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Contact
n-way
2024/12/03 18:09
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Submitted Request(s)
Id
Input Data
Project
Target
Title
To help identifying a request
Reference genome coordinates
Lines with genome coordinates of the form
species chromosome start end comment
File
A file with genome coordinates or a local repeatmasker file
Repeatmasker species
Select a repeatmasker species
Server RM File
A server's repeatmasker file
Families
Matching repeat
A matching repeat name (or part) of RepeatMasker lines
5' truncation
Repeat Masker start position
3' truncation
Repeat Masker end position
Input Parameters ▼
Gap search method
Distance
Overlap
Min flanks
Direct and reverse search
Insert/Gap size
Direct and reverse search
Max overlap
Direct search
Min coverage
Direct search
Max distance
Reverse search
Max difference ratio
Reverse search
Min block flanks
Extraction
Extract extension
Extraction
Muscle Based Optimization
Enabled?
If generated data should be corrected by density
Min target length
Minimum target length - if corrected by density
Max target length
Maximum target length - if corrected by density
Species
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